SNP Report
Basic Infomation
| Name | rs2328532 dbSNP |
|---|---|
| Location | chr:6,20650054 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012636 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13220352 | 0.88[ASN][1000 genomes] |
| rs1569660 | 0.85[ASN][1000 genomes] |
| rs2328530 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2328546 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4710937 | 0.89[ASN][1000 genomes] |
| rs4712520 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4712527 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4712531 | 0.80[AMR][1000 genomes] |
| rs6921014 | 0.85[ASN][1000 genomes] |
| rs7739974 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7748720 | 0.80[AMR][1000 genomes] |
| rs7763304 | 0.89[ASN][1000 genomes] |
| rs7767133 | 0.82[EUR][1000 genomes] |
| rs7771213 | 0.89[ASN][1000 genomes] |
| rs9350273 | 0.87[AMR][1000 genomes] |
| rs9368215 | 0.81[ASN][1000 genomes] |
| rs9465838 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014