SNP Report
Basic Infomation
| Name | rs4712528 dbSNP |
|---|---|
| Location | chr:6,20678430 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012636 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10440832 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2328530 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs2328546 | 0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap] |
| rs4712520 | 0.83[CHB][hapmap] |
| rs4712527 | 0.84[CEU][hapmap];0.83[JPT][hapmap] |
| rs4712531 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6908425 | 0.84[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs6921014 | 0.84[CHB][hapmap] |
| rs7739974 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs7748720 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7763304 | 0.83[CHB][hapmap] |
| rs7771213 | 0.84[CHB][hapmap] |
| rs9350273 | 0.87[EUR][1000 genomes] |
| rs9465838 | 0.83[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014