SNP Report

Basic Infomation

Name	rs2269936 dbSNP
Location	chr:12,48425235
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 105)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10082861	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10219623	1.00[JPT][hapmap]
rs10467101	0.84[JPT][hapmap]
rs10875720	0.91[ASN][1000 genomes]
rs10875722	0.91[ASN][1000 genomes]
rs10875723	0.92[ASN][1000 genomes]
rs10875724	0.84[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10875725	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10875732	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875735	0.91[CEU][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875736	0.81[AFR][1000 genomes]
rs10875737	0.81[AFR][1000 genomes]
rs10875738	0.81[EUR][1000 genomes]
rs10875740	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10875745	1.00[JPT][hapmap]
rs10875746	1.00[JPT][hapmap]
rs10875747	0.80[EUR][1000 genomes]
rs10875748	0.80[EUR][1000 genomes]
rs10875750	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10875767	0.93[JPT][hapmap]
rs10875770	0.93[JPT][hapmap]
rs10875772	0.93[JPT][hapmap]
rs11168355	0.95[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168357	0.95[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11168369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168371	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168374	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168383	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168386	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168401	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11168403	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes]
rs11168413	1.00[JPT][hapmap]
rs11168414	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs11168418	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11168420	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11168421	1.00[JPT][hapmap]
rs11168425	1.00[JPT][hapmap]
rs11168427	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11168433	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11168450	1.00[JPT][hapmap]
rs11168459	0.93[JPT][hapmap]
rs12228854	0.82[YRI][hapmap]
rs12296244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297004	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12297470	1.00[JPT][hapmap]
rs12301339	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12304476	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12305182	0.84[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12305511	1.00[JPT][hapmap]
rs12306451	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12310813	1.00[JPT][hapmap]
rs12310999	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311774	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12311953	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12312134	0.93[JPT][hapmap]
rs12313300	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12313404	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12315625	0.81[AFR][1000 genomes]
rs17122620	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17122666	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17122812	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs1859445	1.00[JPT][hapmap]
rs2012773	1.00[JPT][hapmap]
rs2079295	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2107638	1.00[JPT][hapmap]
rs2158516	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2228500	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2269933	1.00[JPT][hapmap]
rs2269935	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2286021	0.80[EUR][1000 genomes]
rs28459711	0.91[ASN][1000 genomes]
rs3782910	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3782911	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3809322	0.83[YRI][hapmap]
rs4760609	0.84[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4760610	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4760619	1.00[JPT][hapmap]
rs4760622	1.00[JPT][hapmap]
rs4760676	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4760680	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4760681	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4760687	1.00[JPT][hapmap]
rs4760695	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4760696	1.00[JPT][hapmap]
rs4760697	1.00[JPT][hapmap]
rs58952582	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60761335	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61918774	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918806	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61918809	0.81[AFR][1000 genomes]
rs61918810	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6580659	1.00[JPT][hapmap]
rs7135779	1.00[JPT][hapmap]
rs719008	0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs725454	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7299135	0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7299271	0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7299364	0.91[ASN][1000 genomes]
rs73102065	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73102067	0.81[AFR][1000 genomes]
rs7486424	1.00[JPT][hapmap]
rs7964359	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs8804	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs886588	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs989144	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000257955	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)