SNP Report
Basic Infomation
| Name | rs2012773 dbSNP |
|---|---|
| Location | chr:12,48591399 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 84)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10082861 | 1.00[JPT][hapmap] |
| rs10219623 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs10467101 | 0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10783234 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10875724 | 0.93[JPT][hapmap] |
| rs10875725 | 1.00[JPT][hapmap] |
| rs10875732 | 1.00[JPT][hapmap] |
| rs10875745 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs10875746 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs10875750 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs10875756 | 0.84[ASN][1000 genomes] |
| rs10875762 | 0.92[ASN][1000 genomes] |
| rs10875767 | 0.83[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs10875768 | 0.85[ASN][1000 genomes] |
| rs10875769 | 0.88[ASN][1000 genomes] |
| rs10875770 | 0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs10875772 | 0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10875792 | 0.85[JPT][hapmap] |
| rs10875793 | 0.92[JPT][hapmap] |
| rs11168357 | 0.93[JPT][hapmap] |
| rs11168369 | 1.00[JPT][hapmap] |
| rs11168371 | 1.00[JPT][hapmap] |
| rs11168403 | 1.00[JPT][hapmap] |
| rs11168413 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168414 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168418 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168420 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168421 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168425 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168427 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168433 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11168450 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168459 | 0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11168516 | 0.87[JPT][hapmap] |
| rs11558768 | 0.91[ASN][1000 genomes] |
| rs12297470 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs12303741 | 0.84[ASN][1000 genomes] |
| rs12304476 | 1.00[JPT][hapmap] |
| rs12305182 | 0.93[JPT][hapmap] |
| rs12305511 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12306451 | 1.00[JPT][hapmap] |
| rs12310813 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs12312134 | 0.89[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1471997 | 0.86[JPT][hapmap] |
| rs17122666 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs17122812 | 0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1859445 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs2079295 | 0.93[JPT][hapmap] |
| rs2107638 | 0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs2228500 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs2269933 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs2269935 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs2269936 | 1.00[JPT][hapmap] |
| rs2279464 | 0.87[JPT][hapmap] |
| rs2634675 | 0.87[JPT][hapmap] |
| rs2732439 | 0.87[JPT][hapmap] |
| rs2732465 | 0.87[JPT][hapmap] |
| rs3185921 | 0.87[JPT][hapmap] |
| rs3751273 | 0.87[JPT][hapmap] |
| rs3782910 | 1.00[JPT][hapmap] |
| rs4760609 | 0.93[JPT][hapmap] |
| rs4760619 | 1.00[JPT][hapmap] |
| rs4760622 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4760681 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs4760687 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4760689 | 0.84[ASN][1000 genomes] |
| rs4760690 | 0.84[ASN][1000 genomes] |
| rs4760695 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4760696 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760697 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58865997 | 0.84[ASN][1000 genomes] |
| rs60984214 | 0.84[ASN][1000 genomes] |
| rs61940962 | 0.86[ASN][1000 genomes] |
| rs6580659 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7135779 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs719008 | 0.93[JPT][hapmap] |
| rs725454 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs7299135 | 0.93[JPT][hapmap] |
| rs7299271 | 0.93[JPT][hapmap] |
| rs7486424 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs8804 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs886588 | 1.00[JPT][hapmap] |
| rs9634261 | 0.87[JPT][hapmap] |
| rs989144 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000269514 | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014