SNP Report
Basic Infomation
| Name | rs61940962 dbSNP |
|---|---|
| Location | chr:12,48595477 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10431526 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10467101 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10783234 | 0.87[ASN][1000 genomes] |
| rs10875756 | 0.81[ASN][1000 genomes] |
| rs10875762 | 0.90[ASN][1000 genomes] |
| rs10875767 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875768 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10875769 | 0.92[ASN][1000 genomes] |
| rs10875770 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875771 | 0.88[ASN][1000 genomes] |
| rs10875772 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10875792 | 0.89[ASN][1000 genomes] |
| rs10875793 | 0.89[ASN][1000 genomes] |
| rs11168433 | 0.81[ASN][1000 genomes] |
| rs11168450 | 0.86[ASN][1000 genomes] |
| rs11168459 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168516 | 0.89[ASN][1000 genomes] |
| rs11558768 | 0.89[ASN][1000 genomes] |
| rs12303741 | 0.81[ASN][1000 genomes] |
| rs12305511 | 0.92[ASN][1000 genomes] |
| rs12312134 | 0.81[ASN][1000 genomes] |
| rs17122812 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2012773 | 0.86[ASN][1000 genomes] |
| rs2279464 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4760622 | 0.92[ASN][1000 genomes] |
| rs4760625 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4760689 | 0.81[ASN][1000 genomes] |
| rs4760690 | 0.81[ASN][1000 genomes] |
| rs4760695 | 0.92[ASN][1000 genomes] |
| rs4760696 | 0.86[ASN][1000 genomes] |
| rs4760697 | 0.86[ASN][1000 genomes] |
| rs58865997 | 0.81[ASN][1000 genomes] |
| rs60984214 | 0.81[ASN][1000 genomes] |
| rs6580659 | 0.84[ASN][1000 genomes] |
| rs7135779 | 0.86[ASN][1000 genomes] |
| rs9634261 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000269514 | Proximal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
| ENSG00000269514 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014