SNP Report

Basic Infomation

Name	rs10467101 dbSNP
Location	chr:12,48607737
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 77)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10082861	0.91[JPT][hapmap]
rs10219623	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10431526	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10783234	0.85[ASN][1000 genomes]
rs10875725	0.84[JPT][hapmap]
rs10875732	0.82[JPT][hapmap]
rs10875745	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10875746	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs10875750	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10875762	0.88[ASN][1000 genomes]
rs10875767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875768	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10875769	0.90[ASN][1000 genomes]
rs10875770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875771	0.86[ASN][1000 genomes]
rs10875772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875792	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10875793	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11168369	0.84[JPT][hapmap]
rs11168371	0.84[JPT][hapmap]
rs11168403	0.84[JPT][hapmap]
rs11168413	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11168414	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11168418	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11168420	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11168421	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11168425	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11168427	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11168433	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11168450	0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs11168459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168516	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11168536	0.81[EUR][1000 genomes]
rs11558768	0.87[ASN][1000 genomes]
rs12297470	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs12301339	0.88[CEU][hapmap]
rs12304476	0.83[JPT][hapmap]
rs12305511	0.88[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs12306451	0.84[JPT][hapmap]
rs12310813	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs12312134	0.83[CHB][hapmap]
rs1471997	0.84[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17122666	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs17122812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859445	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2012773	0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs2054903	0.84[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2054904	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2107638	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2228500	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2269933	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2269935	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2269936	0.84[JPT][hapmap]
rs2279464	0.93[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634675	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2732439	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs2732465	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs3185921	0.84[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs3751273	0.84[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs3782910	0.84[JPT][hapmap]
rs4760619	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs4760622	0.88[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs4760625	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4760681	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs4760687	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4760695	0.88[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs4760696	0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4760697	0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs61940962	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6580659	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7135779	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs725454	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7486424	0.84[JPT][hapmap]
rs8804	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs886588	0.84[JPT][hapmap]
rs9634261	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs989144	0.84[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000269514	Distal transcriptional regulation
OR10AD1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)