SNP Report
Basic Infomation
| Name | rs11168536 dbSNP |
|---|---|
| Location | chr:12,48745051 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10431526 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10467101 | 0.81[EUR][1000 genomes] |
| rs10875772 | 0.81[EUR][1000 genomes] |
| rs10875792 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875793 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875799 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168516 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1471997 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2054903 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2054904 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2279464 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2450992 | 0.93[ASN][1000 genomes] |
| rs2634675 | 0.95[ASN][1000 genomes] |
| rs2732439 | 0.95[ASN][1000 genomes] |
| rs2732465 | 0.95[ASN][1000 genomes] |
| rs3185921 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3751273 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760625 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9634261 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9788082 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF641 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| RNU5E-1 | Distal transcriptional regulation |
| NNMT | Distal transcriptional regulation |
| RALY | Distal transcriptional regulation |
| ENSG00000228265 | Distal transcriptional regulation |
| MRPS36 | Distal transcriptional regulation |
| ENSG00000257763 | Distal transcriptional regulation |
| ENSG00000258273 | Distal transcriptional regulation |
| ENSG00000269282 | Distal transcriptional regulation |
| ADAMTS17 | Distal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| CACNB3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014