SNP Report
Basic Infomation
| Name | rs10875799 dbSNP |
|---|---|
| Location | chr:12,48740879 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10431526 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875792 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875793 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168516 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168536 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1471997 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2054903 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2054904 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2279464 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2450992 | 0.93[ASN][1000 genomes] |
| rs2634675 | 0.95[ASN][1000 genomes] |
| rs2732439 | 0.95[ASN][1000 genomes] |
| rs2732465 | 0.95[ASN][1000 genomes] |
| rs3185921 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3751273 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760625 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9634261 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9788082 | 0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF641 | Proximal transcriptional regulation |
| ENSG00000257735 | Proximal transcriptional regulation |
| ENSG00000258273 | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| MIR3193 | Distal transcriptional regulation |
| ENSG00000257763 | Distal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
| ZNF641 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014