SNP Report

Basic Infomation

Name	rs1471997 dbSNP
Location	chr:12,48723595
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10219623	0.86[JPT][hapmap]
rs10431526	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10467101	0.84[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10875750	0.86[JPT][hapmap]
rs10875767	0.86[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs10875770	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[TSI][hapmap]
rs10875772	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10875792	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875793	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875799	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168425	0.86[JPT][hapmap]
rs11168427	0.86[JPT][hapmap]
rs11168433	0.86[JPT][hapmap]
rs11168450	0.86[JPT][hapmap]
rs11168459	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[TSI][hapmap]
rs11168516	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168536	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12297470	0.85[JPT][hapmap]
rs12305511	0.86[JPT][hapmap]
rs12310813	0.86[JPT][hapmap]
rs17122812	0.84[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2012773	0.86[JPT][hapmap]
rs2054903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054904	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228500	0.86[JPT][hapmap]
rs2269933	0.86[JPT][hapmap]
rs2279464	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450992	0.91[ASN][1000 genomes]
rs2634675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2732439	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2732465	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3185921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3751273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4760622	0.86[JPT][hapmap]
rs4760625	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4760687	0.86[JPT][hapmap]
rs4760695	0.86[JPT][hapmap]
rs4760696	0.86[JPT][hapmap]
rs4760697	0.86[JPT][hapmap]
rs6580659	0.84[JPT][hapmap]
rs7135779	0.85[JPT][hapmap]
rs7486424	0.86[JPT][hapmap]
rs8804	0.86[JPT][hapmap]
rs9634261	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9788082	0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
OR10AD1	Distal transcriptional regulation
ZNF641	Distal transcriptional regulation
ENSG00000257735	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 9)

eQTL related gene	Source
TMEM106C	SCAN
H1FNT	SCAN
ASB8	SCAN
ZNF641	SCAN
RND1	SCAN
IRAK4	SCAN
PFKM	SCAN
ZNF641	SCAN
FAM186B	SCAN