SNP Report

Basic Infomation

Name	rs6580659 dbSNP
Location	chr:12,48588035
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 85)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10082861	1.00[JPT][hapmap]
rs10219623	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10467101	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10783234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10875724	0.92[JPT][hapmap]
rs10875725	1.00[JPT][hapmap]
rs10875732	1.00[JPT][hapmap]
rs10875745	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10875746	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10875750	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10875756	0.82[ASN][1000 genomes]
rs10875762	0.90[ASN][1000 genomes]
rs10875767	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs10875768	0.86[ASN][1000 genomes]
rs10875769	0.86[ASN][1000 genomes]
rs10875770	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs10875772	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10875792	0.83[JPT][hapmap]
rs10875793	0.91[JPT][hapmap]
rs11168357	0.92[JPT][hapmap]
rs11168369	1.00[JPT][hapmap]
rs11168371	1.00[JPT][hapmap]
rs11168403	1.00[JPT][hapmap]
rs11168413	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11168414	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11168418	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11168420	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11168421	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11168425	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11168427	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11168433	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11168450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168459	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11168516	0.85[JPT][hapmap]
rs11558768	0.89[ASN][1000 genomes]
rs12297470	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12303741	0.82[ASN][1000 genomes]
rs12304476	1.00[JPT][hapmap]
rs12305182	0.92[JPT][hapmap]
rs12305511	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12306451	1.00[JPT][hapmap]
rs12310813	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12312134	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs1471997	0.84[JPT][hapmap]
rs17122666	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17122812	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs1859445	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2012773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2054903	0.85[JPT][hapmap]
rs2079295	0.92[JPT][hapmap]
rs2107638	1.00[JPT][hapmap]
rs2228500	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2269933	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2269935	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2269936	1.00[JPT][hapmap]
rs2279464	0.85[JPT][hapmap]
rs2634675	0.85[JPT][hapmap]
rs2732439	0.85[JPT][hapmap]
rs2732465	0.85[JPT][hapmap]
rs3185921	0.85[JPT][hapmap]
rs3751273	0.85[JPT][hapmap]
rs3782910	1.00[JPT][hapmap]
rs4760609	0.92[JPT][hapmap]
rs4760619	1.00[JPT][hapmap]
rs4760622	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4760681	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4760687	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4760689	0.82[ASN][1000 genomes]
rs4760690	0.82[ASN][1000 genomes]
rs4760695	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4760696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4760697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58865997	0.82[ASN][1000 genomes]
rs60984214	0.82[ASN][1000 genomes]
rs61940962	0.84[ASN][1000 genomes]
rs7135779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs719008	0.92[JPT][hapmap]
rs725454	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7299135	0.92[JPT][hapmap]
rs7299271	0.92[JPT][hapmap]
rs7486424	1.00[JPT][hapmap]
rs8804	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs886588	1.00[JPT][hapmap]
rs9634261	0.85[JPT][hapmap]
rs989144	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000269514	Proximal transcriptional regulation
ENSG00000269514	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)