SNP Report
Basic Infomation
| Name | rs2269935 dbSNP |
|---|---|
| Location | chr:12,48516464 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 120)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10082861 | 0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs10219623 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10219645 | 0.89[ASN][1000 genomes] |
| rs10467101 | 0.88[CHB][hapmap];0.84[JPT][hapmap] |
| rs10875724 | 0.93[JPT][hapmap] |
| rs10875725 | 1.00[JPT][hapmap] |
| rs10875732 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs10875735 | 0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10875736 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10875737 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10875738 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10875740 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10875745 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875746 | 0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10875747 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875748 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875750 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10875756 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10875762 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10875767 | 0.88[CHB][hapmap];0.93[JPT][hapmap] |
| rs10875770 | 0.89[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap] |
| rs10875772 | 0.89[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap] |
| rs10875792 | 0.86[CHB][hapmap];0.85[JPT][hapmap] |
| rs10875793 | 0.82[CHB][hapmap];0.92[JPT][hapmap] |
| rs11168355 | 0.84[GIH][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs11168357 | 0.93[JPT][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs11168369 | 0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs11168371 | 0.93[CEU][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap] |
| rs11168374 | 0.82[EUR][1000 genomes] |
| rs11168383 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11168386 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11168401 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11168403 | 0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11168413 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168414 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168415 | 0.97[ASN][1000 genomes] |
| rs11168416 | 0.97[ASN][1000 genomes] |
| rs11168418 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168420 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11168421 | 0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11168422 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168425 | 0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11168427 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11168433 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168450 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs11168459 | 0.89[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap] |
| rs11168516 | 0.83[CHB][hapmap];0.87[JPT][hapmap] |
| rs11558768 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12228854 | 0.82[YRI][hapmap] |
| rs12296244 | 0.82[EUR][1000 genomes] |
| rs12297004 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12297470 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12301339 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12303741 | 0.90[ASN][1000 genomes] |
| rs12304476 | 0.84[ASW][hapmap];0.93[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12305182 | 0.93[JPT][hapmap] |
| rs12305511 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs12306290 | 0.94[ASN][1000 genomes] |
| rs12306451 | 0.84[ASW][hapmap];0.93[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12310813 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12310999 | 0.82[EUR][1000 genomes] |
| rs12311774 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12311953 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12312134 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12313300 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12313404 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12315625 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17122620 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17122666 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17122812 | 0.89[CHB][hapmap];0.93[JPT][hapmap] |
| rs1859445 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2012773 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs2079295 | 0.93[JPT][hapmap] |
| rs2107638 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2158516 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2228500 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2269933 | 0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs2269936 | 0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2279464 | 0.82[CHB][hapmap];0.87[JPT][hapmap] |
| rs2286021 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3782910 | 0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3782911 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3809322 | 0.82[YRI][hapmap] |
| rs4760609 | 0.84[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap] |
| rs4760619 | 0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs4760622 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs4760680 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4760681 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4760684 | 0.97[ASN][1000 genomes] |
| rs4760687 | 0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4760689 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4760690 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4760695 | 0.84[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes] |
| rs4760696 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs4760697 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs58865997 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs58952582 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs60106007 | 0.97[ASN][1000 genomes] |
| rs60761335 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs60984214 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61343568 | 0.91[ASN][1000 genomes] |
| rs61918774 | 0.82[EUR][1000 genomes] |
| rs61918806 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61918809 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61918810 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs61918826 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6580659 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs7135779 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs719008 | 0.93[JPT][hapmap] |
| rs725454 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7299135 | 0.93[JPT][hapmap] |
| rs7299271 | 0.93[JPT][hapmap] |
| rs73102065 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73102067 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7485355 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7486424 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs8804 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs886588 | 0.84[ASW][hapmap];0.93[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9634261 | 0.83[CHB][hapmap];0.87[JPT][hapmap] |
| rs989144 | 0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Proximal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| ENSG00000257885 | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014