SNP Report
Basic Infomation
| Name | rs11168416 dbSNP |
|---|---|
| Location | chr:12,48513979 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10082861 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10219623 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10219645 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10875745 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10875746 | 0.95[ASN][1000 genomes] |
| rs10875747 | 0.97[ASN][1000 genomes] |
| rs10875748 | 0.97[ASN][1000 genomes] |
| rs10875750 | 0.95[ASN][1000 genomes] |
| rs10875756 | 0.87[ASN][1000 genomes] |
| rs11168413 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11168414 | 0.97[ASN][1000 genomes] |
| rs11168415 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168418 | 0.97[ASN][1000 genomes] |
| rs11168420 | 0.90[ASN][1000 genomes] |
| rs11168421 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168422 | 0.97[ASN][1000 genomes] |
| rs11168425 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168427 | 0.94[ASN][1000 genomes] |
| rs11168433 | 0.87[ASN][1000 genomes] |
| rs12297470 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12303741 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12306290 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12310813 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12312134 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17122666 | 0.91[ASN][1000 genomes] |
| rs1859445 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2107638 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2228500 | 0.97[ASN][1000 genomes] |
| rs2269933 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2269935 | 0.97[ASN][1000 genomes] |
| rs2286021 | 0.95[ASN][1000 genomes] |
| rs4760619 | 0.90[ASN][1000 genomes] |
| rs4760681 | 0.95[ASN][1000 genomes] |
| rs4760684 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760687 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4760689 | 0.87[ASN][1000 genomes] |
| rs4760690 | 0.87[ASN][1000 genomes] |
| rs58865997 | 0.87[ASN][1000 genomes] |
| rs60106007 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60984214 | 0.87[ASN][1000 genomes] |
| rs61343568 | 0.94[ASN][1000 genomes] |
| rs61918826 | 0.95[ASN][1000 genomes] |
| rs725454 | 0.91[ASN][1000 genomes] |
| rs7485355 | 0.95[ASN][1000 genomes] |
| rs7486424 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8804 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Proximal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014