SNP Report
Basic Infomation
| Name | rs11168355 dbSNP |
|---|---|
| Location | chr:12,48410978 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 60)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10082861 | 0.82[CHB][hapmap] |
| rs10875720 | 0.93[ASN][1000 genomes] |
| rs10875722 | 0.93[ASN][1000 genomes] |
| rs10875723 | 0.92[ASN][1000 genomes] |
| rs10875724 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10875725 | 0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[ASN][1000 genomes] |
| rs10875732 | 0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10875745 | 0.88[GIH][hapmap] |
| rs10875746 | 0.92[GIH][hapmap] |
| rs10875750 | 1.00[GIH][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs10875772 | 0.82[YRI][hapmap] |
| rs11168357 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11168369 | 0.94[CHB][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168371 | 0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes] |
| rs11168374 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168403 | 0.95[CHB][hapmap] |
| rs11168414 | 1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs11168418 | 1.00[GIH][hapmap];0.85[TSI][hapmap] |
| rs11168420 | 1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap] |
| rs11168421 | 0.84[GIH][hapmap] |
| rs11168425 | 0.93[GIH][hapmap] |
| rs11168427 | 1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs11168433 | 1.00[GIH][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap] |
| rs12228854 | 0.82[LWK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap] |
| rs12296244 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12297470 | 0.93[GIH][hapmap];0.85[JPT][hapmap] |
| rs12304476 | 0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs12305182 | 0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12305511 | 0.88[GIH][hapmap];0.83[LWK][hapmap] |
| rs12306451 | 0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.82[YRI][hapmap] |
| rs12310813 | 0.93[GIH][hapmap] |
| rs12310999 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17122666 | 0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs1859445 | 0.96[GIH][hapmap] |
| rs1990028 | 0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2079295 | 0.93[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2228500 | 1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs2269933 | 0.89[GIH][hapmap] |
| rs2269935 | 0.84[GIH][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs2269936 | 0.95[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28459711 | 0.93[ASN][1000 genomes] |
| rs3782910 | 0.95[CHB][hapmap];0.82[YRI][hapmap] |
| rs3809322 | 1.00[YRI][hapmap] |
| rs4760609 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4760610 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4760622 | 0.88[GIH][hapmap] |
| rs4760676 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4760681 | 0.96[GIH][hapmap];0.85[TSI][hapmap] |
| rs4760687 | 0.93[GIH][hapmap] |
| rs4760695 | 0.88[GIH][hapmap];0.83[LWK][hapmap];0.82[YRI][hapmap] |
| rs61918774 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs719008 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs725454 | 0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap] |
| rs7299135 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7299271 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7299364 | 0.93[ASN][1000 genomes] |
| rs7964359 | 0.87[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs8804 | 1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap] |
| rs886588 | 0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs989144 | 0.95[CHB][hapmap];0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014