SNP Report
Basic Infomation
| Name | rs3809322 dbSNP |
|---|---|
| Location | chr:12,48400090 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875714 | 0.88[EUR][1000 genomes] |
| rs10875715 | 0.86[EUR][1000 genomes] |
| rs10875750 | 0.82[YRI][hapmap] |
| rs11168355 | 1.00[YRI][hapmap] |
| rs11168357 | 1.00[YRI][hapmap] |
| rs11168369 | 0.83[YRI][hapmap] |
| rs11168414 | 0.82[YRI][hapmap] |
| rs11168427 | 0.82[YRI][hapmap] |
| rs11168433 | 0.82[YRI][hapmap] |
| rs12228854 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12304476 | 0.82[YRI][hapmap] |
| rs12306451 | 0.82[YRI][hapmap] |
| rs12308909 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12721420 | 0.85[CEU][hapmap] |
| rs17122666 | 0.82[YRI][hapmap] |
| rs1990028 | 0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes] |
| rs2213162 | 0.95[CHB][hapmap] |
| rs2213163 | 0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2226946 | 0.95[CHB][hapmap] |
| rs2228500 | 0.82[YRI][hapmap] |
| rs2269935 | 0.82[YRI][hapmap] |
| rs2269936 | 0.83[YRI][hapmap] |
| rs2898056 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3737548 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3782910 | 0.83[YRI][hapmap] |
| rs3782915 | 0.88[EUR][1000 genomes] |
| rs3809324 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760695 | 0.82[YRI][hapmap] |
| rs56037230 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56959315 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs740022 | 0.89[EUR][1000 genomes] |
| rs886588 | 0.82[YRI][hapmap] |
| rs989144 | 0.83[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| ENSG00000257985 | Proximal transcriptional regulation |
| COL2A1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014