SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875714	0.88[EUR][1000 genomes]
rs10875715	0.86[EUR][1000 genomes]
rs12228854	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12308909	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1990028	0.84[AMR][1000 genomes]
rs2213163	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2898056	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3737548	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3782915	0.88[EUR][1000 genomes]
rs3809322	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037230	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56959315	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs740022	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)