SNP Report
Basic Infomation
| Name | rs56959315 dbSNP |
|---|---|
| Location | chr:12,48391127 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875714 | 0.83[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10875715 | 0.92[EUR][1000 genomes] |
| rs12228854 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12308909 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2023939 | 0.96[ASN][1000 genomes] |
| rs2213162 | 0.97[ASN][1000 genomes] |
| rs2213163 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2226946 | 0.97[ASN][1000 genomes] |
| rs2248990 | 0.92[ASN][1000 genomes] |
| rs2276453 | 0.95[ASN][1000 genomes] |
| rs2898056 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3737548 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3782915 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3809322 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3809324 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56037230 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs740022 | 0.90[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014