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rVarBase
SNP Report
Basic Infomation
Name
rs2023939  
dbSNP
Location
chr:12,48388612
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12308909
0.87[ASN][1000 genomes]
rs1635532
0.91[EUR][1000 genomes]
rs1635533
0.94[EUR][1000 genomes]
rs1793953
0.93[EUR][1000 genomes]
rs1793954
0.92[EUR][1000 genomes]
rs2213162
0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2213163
0.96[ASN][1000 genomes]
rs2226946
0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2248990
0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276453
0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3737548
0.96[ASN][1000 genomes]
rs56037230
0.96[ASN][1000 genomes]
rs56959315
0.96[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
COL2A1
Distal transcriptional regulation
COL2A1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)