SNP Report
Basic Infomation
| Name | rs12721420 dbSNP |
|---|---|
| Location | chr:12,48358794 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1015390 | 0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs10875713 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168324 | 0.81[ASN][1000 genomes] |
| rs11541194 | 0.91[ASN][1000 genomes] |
| rs11561406 | 0.89[ASN][1000 genomes] |
| rs12228854 | 0.85[CEU][hapmap] |
| rs12721416 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs3809322 | 0.85[CEU][hapmap] |
| rs4073729 | 0.80[ASN][1000 genomes] |
| rs4760608 | 0.87[CEU][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs4760673 | 0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM106C | Proximal transcriptional regulation |
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| TMEM106C | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014