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rVarBase
SNP Report
Basic Infomation
Name
rs12721416  
dbSNP
Location
chr:12,48346363
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1015390
0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875713
1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11168324
0.80[ASN][1000 genomes]
rs11541194
0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11561406
0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12721420
1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4760608
0.88[JPT][hapmap]
rs4760673
0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
VDR
Distal transcriptional regulation
PFKM
Distal transcriptional regulation
SENP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)