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rVarBase
SNP Report
Basic Infomation
Name
rs11168324  
dbSNP
Location
chr:12,48340370
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1015390
0.85[ASN][1000 genomes]
rs10875713
0.81[ASN][1000 genomes]
rs11541194
0.82[ASN][1000 genomes]
rs12721416
0.80[ASN][1000 genomes]
rs12721420
0.81[ASN][1000 genomes]
rs4073729
0.90[ASN][1000 genomes]
rs4583039
0.81[ASN][1000 genomes]
rs4760673
0.80[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
VDR
Proximal transcriptional regulation
PPP1CA
Distal transcriptional regulation
RPAP3
Distal transcriptional regulation
ENSG00000257433
Distal transcriptional regulation
VDR
Distal transcriptional regulation
COL2A1
Distal transcriptional regulation
TMEM106C
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)