SNP Report

Basic Infomation

Name	rs7964359 dbSNP
Location	chr:12,48410566
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10082861	0.93[CHB][hapmap]
rs10875720	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10875722	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10875723	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10875724	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs10875725	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs10875732	0.82[ASN][1000 genomes]
rs11168355	0.87[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs11168357	0.87[CHB][hapmap];0.89[ASN][1000 genomes]
rs11168369	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs11168371	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs11168374	0.82[ASN][1000 genomes]
rs11168403	0.81[CHB][hapmap]
rs11168421	0.81[CHB][hapmap]
rs11168425	0.81[CHB][hapmap]
rs12296244	0.82[ASN][1000 genomes]
rs12304476	0.80[CHB][hapmap]
rs12305182	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs12306451	0.81[CHB][hapmap]
rs12310999	0.82[ASN][1000 genomes]
rs17122666	0.81[CHB][hapmap]
rs2079295	0.83[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2269933	0.80[CHB][hapmap]
rs2269936	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs28459711	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3782910	0.81[CHB][hapmap]
rs4760609	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs4760610	0.87[ASN][1000 genomes]
rs4760676	0.83[ASN][1000 genomes]
rs4760687	0.81[CHB][hapmap]
rs61918774	0.82[ASN][1000 genomes]
rs719008	0.88[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs725454	0.81[CHB][hapmap]
rs7299135	0.87[CHB][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7299271	0.87[CHB][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7299364	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7299762	0.85[AMR][1000 genomes]
rs7486424	0.81[CHB][hapmap]
rs886588	0.81[CHB][hapmap]
rs989144	0.81[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)