SNP Report
Basic Infomation
| Name | rs4760676 dbSNP |
|---|---|
| Location | chr:12,48421663 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875720 | 0.93[ASN][1000 genomes] |
| rs10875722 | 0.93[ASN][1000 genomes] |
| rs10875723 | 0.93[ASN][1000 genomes] |
| rs10875724 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10875725 | 0.96[ASN][1000 genomes] |
| rs10875732 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168355 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168357 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168369 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168371 | 0.96[ASN][1000 genomes] |
| rs11168374 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12296244 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12305182 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12310999 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1990028 | 0.91[EUR][1000 genomes] |
| rs2079295 | 0.92[ASN][1000 genomes] |
| rs2269936 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28459711 | 0.93[ASN][1000 genomes] |
| rs4760609 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4760610 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs61918774 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs719008 | 0.93[ASN][1000 genomes] |
| rs7299135 | 0.93[ASN][1000 genomes] |
| rs7299271 | 0.93[ASN][1000 genomes] |
| rs7299364 | 0.93[ASN][1000 genomes] |
| rs7964359 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257955 | Proximal transcriptional regulation |
| TMEM106C | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014