SNP Report

Basic Infomation

Name	rs2079295 dbSNP
Location	chr:12,48412592
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 74)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10082861	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs10219623	0.93[JPT][hapmap]
rs10875720	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10875722	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10875723	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875724	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10875725	0.86[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs10875732	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs10875745	0.93[JPT][hapmap]
rs10875746	0.93[JPT][hapmap]
rs10875750	0.93[JPT][hapmap]
rs10875767	0.87[JPT][hapmap]
rs10875770	0.86[JPT][hapmap]
rs10875772	0.86[JPT][hapmap]
rs11168355	0.93[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs11168357	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11168369	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs11168371	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs11168374	0.90[ASN][1000 genomes]
rs11168403	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11168413	0.93[JPT][hapmap]
rs11168414	0.93[JPT][hapmap]
rs11168418	0.93[JPT][hapmap]
rs11168420	0.93[JPT][hapmap]
rs11168421	0.93[JPT][hapmap]
rs11168425	0.93[JPT][hapmap]
rs11168427	0.93[JPT][hapmap]
rs11168433	0.93[JPT][hapmap]
rs11168450	0.93[JPT][hapmap]
rs11168459	0.86[JPT][hapmap]
rs12296244	0.90[ASN][1000 genomes]
rs12297470	0.93[JPT][hapmap]
rs12304476	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12305182	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12305511	0.93[JPT][hapmap]
rs12306451	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12310813	0.93[JPT][hapmap]
rs12310999	0.90[ASN][1000 genomes]
rs12312134	0.87[JPT][hapmap]
rs17122666	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs17122812	0.87[JPT][hapmap]
rs1859445	0.93[JPT][hapmap]
rs2012773	0.93[JPT][hapmap]
rs2107638	0.93[JPT][hapmap]
rs2228500	0.93[JPT][hapmap]
rs2269933	0.93[JPT][hapmap]
rs2269935	0.93[JPT][hapmap]
rs2269936	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs28459711	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3782910	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4760609	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4760610	0.95[ASN][1000 genomes]
rs4760619	0.93[JPT][hapmap]
rs4760622	0.93[JPT][hapmap]
rs4760676	0.92[ASN][1000 genomes]
rs4760681	0.93[JPT][hapmap]
rs4760687	0.93[JPT][hapmap]
rs4760695	0.93[JPT][hapmap]
rs4760696	0.93[JPT][hapmap]
rs4760697	0.93[JPT][hapmap]
rs61918774	0.90[ASN][1000 genomes]
rs6580659	0.92[JPT][hapmap]
rs7135779	0.93[JPT][hapmap]
rs719008	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs725454	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs7299135	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7299271	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7299364	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7299762	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7486424	0.93[JPT][hapmap]
rs7964359	0.83[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8804	0.93[JPT][hapmap]
rs886588	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs989144	0.93[CHB][hapmap];0.93[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
COL2A1	Distal transcriptional regulation
ENSG00000257955	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)