SNP Report
Basic Infomation
| Name | rs7299364 dbSNP |
|---|---|
| Location | chr:12,48413979 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875723 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10875724 | 0.95[ASN][1000 genomes] |
| rs10875725 | 0.91[ASN][1000 genomes] |
| rs10875732 | 0.91[ASN][1000 genomes] |
| rs11168355 | 0.93[ASN][1000 genomes] |
| rs11168357 | 0.96[ASN][1000 genomes] |
| rs11168369 | 0.91[ASN][1000 genomes] |
| rs11168371 | 0.91[ASN][1000 genomes] |
| rs11168374 | 0.91[ASN][1000 genomes] |
| rs12296244 | 0.91[ASN][1000 genomes] |
| rs12305182 | 0.93[ASN][1000 genomes] |
| rs12310999 | 0.91[ASN][1000 genomes] |
| rs2079295 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2269936 | 0.91[ASN][1000 genomes] |
| rs28459711 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760609 | 0.97[ASN][1000 genomes] |
| rs4760610 | 0.96[ASN][1000 genomes] |
| rs4760676 | 0.93[ASN][1000 genomes] |
| rs61918774 | 0.91[ASN][1000 genomes] |
| rs719008 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7299135 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7299271 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7299762 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7964359 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014