SNP Report
Basic Infomation
| Name | rs58952582 dbSNP |
|---|---|
| Location | chr:12,48458448 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 71)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10219623 | 0.85[AMR][1000 genomes] |
| rs10875725 | 0.82[ASN][1000 genomes] |
| rs10875732 | 0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10875735 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875736 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10875737 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10875738 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10875740 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10875745 | 0.85[AMR][1000 genomes] |
| rs10875746 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10875747 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10875748 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10875750 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10875756 | 0.82[EUR][1000 genomes] |
| rs11168369 | 0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11168371 | 0.83[ASN][1000 genomes] |
| rs11168374 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11168383 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168386 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168401 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168403 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168413 | 0.85[AMR][1000 genomes] |
| rs11168414 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11168418 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11168420 | 0.91[EUR][1000 genomes] |
| rs11168422 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11168427 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11168433 | 0.82[EUR][1000 genomes] |
| rs12296244 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12297004 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12297470 | 0.85[AMR][1000 genomes] |
| rs12301339 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12304476 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12306451 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12310813 | 0.85[AMR][1000 genomes] |
| rs12310999 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12311774 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12311953 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12313300 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12313404 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12315625 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17122620 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17122666 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1859445 | 0.85[AMR][1000 genomes] |
| rs2107638 | 0.85[AMR][1000 genomes] |
| rs2158516 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2228500 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2269935 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2269936 | 0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2286021 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3782910 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3782911 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4760680 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760681 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4760689 | 0.82[EUR][1000 genomes] |
| rs4760690 | 0.82[EUR][1000 genomes] |
| rs58865997 | 0.82[EUR][1000 genomes] |
| rs60761335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60984214 | 0.82[EUR][1000 genomes] |
| rs61918774 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61918806 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61918809 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs61918810 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61918826 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs725454 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73102065 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73102067 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7485355 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs8804 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs886588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs989144 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014