SNP Report

Basic Infomation

Name	rs201330 dbSNP
Location	chr:6,21046318
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 69)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11964983	1.00[ASN][1000 genomes]
rs16884681	1.00[ASN][1000 genomes]
rs16884685	1.00[ASN][1000 genomes]
rs16884693	1.00[ASN][1000 genomes]
rs16884699	1.00[ASN][1000 genomes]
rs16884705	1.00[ASN][1000 genomes]
rs16884709	1.00[ASN][1000 genomes]
rs16884713	1.00[ASN][1000 genomes]
rs169293	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs201287	1.00[ASN][1000 genomes]
rs201288	1.00[ASN][1000 genomes]
rs201290	1.00[ASN][1000 genomes]
rs201291	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs201294	1.00[ASN][1000 genomes]
rs201297	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201303	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs201304	0.80[CEU][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs201305	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs201306	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs201307	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs201308	1.00[ASN][1000 genomes]
rs201309	1.00[ASN][1000 genomes]
rs201310	1.00[ASN][1000 genomes]
rs201313	0.89[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201315	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201328	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201339	1.00[CHD][hapmap]
rs2446488	1.00[YRI][hapmap]
rs2494729	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2876583	1.00[CHD][hapmap]
rs364334	1.00[ASN][1000 genomes]
rs374654	1.00[CHD][hapmap]
rs3935207	1.00[CHD][hapmap]
rs4340995	1.00[CHD][hapmap];0.93[MKK][hapmap]
rs4389757	1.00[CHD][hapmap]
rs4413596	1.00[CHD][hapmap]
rs4710955	1.00[CHD][hapmap]
rs4712569	1.00[CHD][hapmap]
rs55740001	1.00[ASN][1000 genomes]
rs55841329	1.00[ASN][1000 genomes]
rs58204955	1.00[ASN][1000 genomes]
rs59214549	1.00[ASN][1000 genomes]
rs60081217	1.00[ASN][1000 genomes]
rs62403408	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404466	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62404499	1.00[ASN][1000 genomes]
rs6909332	1.00[CHD][hapmap]
rs6910032	1.00[CHD][hapmap]
rs6915209	1.00[CHD][hapmap]
rs6915237	1.00[CHD][hapmap]
rs6922768	1.00[ASN][1000 genomes]
rs73387991	1.00[ASN][1000 genomes]
rs73387996	1.00[ASN][1000 genomes]
rs73387998	1.00[ASN][1000 genomes]
rs73387999	1.00[ASN][1000 genomes]
rs73388001	1.00[ASN][1000 genomes]
rs73388002	1.00[ASN][1000 genomes]
rs73389904	1.00[ASN][1000 genomes]
rs73389907	1.00[ASN][1000 genomes]
rs73389909	1.00[ASN][1000 genomes]
rs73389911	1.00[ASN][1000 genomes]
rs73735009	1.00[ASN][1000 genomes]
rs7454011	1.00[ASN][1000 genomes]
rs7749397	1.00[CHD][hapmap]
rs7750839	1.00[CHD][hapmap]
rs7761330	1.00[ASN][1000 genomes]
rs7766346	1.00[CHD][hapmap]
rs7773973	1.00[CHD][hapmap];0.93[MKK][hapmap]
rs9465941	1.00[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)