SNP Report
Basic Infomation
| Name | rs2446488 dbSNP |
|---|---|
| Location | chr:6,21136533 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10456237 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201297 | 1.00[YRI][hapmap] |
| rs201313 | 1.00[YRI][hapmap] |
| rs201315 | 1.00[YRI][hapmap] |
| rs201328 | 1.00[YRI][hapmap] |
| rs201330 | 1.00[YRI][hapmap] |
| rs2446485 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2446486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4340995 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4712581 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55857346 | 1.00[ASN][1000 genomes] |
| rs6904648 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7773973 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9350320 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465963 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9986401 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014