SNP Report
Basic Infomation
| Name | rs201313 dbSNP |
|---|---|
| Location | chr:6,21038922 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs169293 | 0.81[EUR][1000 genomes] |
| rs201287 | 0.81[EUR][1000 genomes] |
| rs201288 | 0.81[EUR][1000 genomes] |
| rs201290 | 0.81[EUR][1000 genomes] |
| rs201297 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs201303 | 0.81[EUR][1000 genomes] |
| rs201304 | 0.82[EUR][1000 genomes] |
| rs201305 | 0.82[EUR][1000 genomes] |
| rs201306 | 0.82[EUR][1000 genomes] |
| rs201307 | 0.81[EUR][1000 genomes] |
| rs201315 | 0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs201328 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs201330 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2446488 | 1.00[YRI][hapmap] |
| rs2494729 | 0.80[EUR][1000 genomes] |
| rs62403408 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOX4 | Distal transcriptional regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014