SNP Report

Basic Infomation

Name	rs201307 dbSNP
Location	chr:6,21025758
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 69)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11964983	1.00[ASN][1000 genomes]
rs16884681	1.00[ASN][1000 genomes]
rs16884685	1.00[ASN][1000 genomes]
rs16884693	1.00[ASN][1000 genomes]
rs16884699	1.00[ASN][1000 genomes]
rs16884705	1.00[ASN][1000 genomes]
rs16884709	1.00[ASN][1000 genomes]
rs16884713	1.00[ASN][1000 genomes]
rs169293	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201287	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201288	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201291	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201292	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs201294	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201297	1.00[ASN][1000 genomes]
rs201303	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201304	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201305	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201306	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201308	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201309	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201310	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201313	0.81[EUR][1000 genomes]
rs201315	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs201328	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs201330	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs201339	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs2494729	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876583	1.00[CHD][hapmap]
rs364334	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs374654	1.00[CHD][hapmap]
rs3935207	1.00[CHD][hapmap]
rs4340995	1.00[CHD][hapmap]
rs4389757	1.00[CHD][hapmap]
rs4413596	1.00[CHD][hapmap]
rs4710955	1.00[CHD][hapmap]
rs4712569	1.00[CHD][hapmap]
rs55740001	1.00[ASN][1000 genomes]
rs55841329	1.00[ASN][1000 genomes]
rs58204955	1.00[ASN][1000 genomes]
rs59214549	1.00[ASN][1000 genomes]
rs60081217	1.00[ASN][1000 genomes]
rs62403408	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404466	1.00[ASN][1000 genomes]
rs62404499	1.00[ASN][1000 genomes]
rs6909332	1.00[CHD][hapmap]
rs6910032	1.00[CHD][hapmap]
rs6915209	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs6915237	1.00[CHD][hapmap]
rs6922768	1.00[ASN][1000 genomes]
rs73387991	1.00[ASN][1000 genomes]
rs73387996	1.00[ASN][1000 genomes]
rs73387998	1.00[ASN][1000 genomes]
rs73387999	1.00[ASN][1000 genomes]
rs73388001	1.00[ASN][1000 genomes]
rs73388002	1.00[ASN][1000 genomes]
rs73389904	1.00[ASN][1000 genomes]
rs73389907	1.00[ASN][1000 genomes]
rs73389909	1.00[ASN][1000 genomes]
rs73389911	1.00[ASN][1000 genomes]
rs73735009	1.00[ASN][1000 genomes]
rs7454011	1.00[ASN][1000 genomes]
rs7749397	1.00[CHD][hapmap]
rs7750839	1.00[CHD][hapmap]
rs7761330	1.00[ASN][1000 genomes]
rs7766346	1.00[CHD][hapmap]
rs7773973	1.00[CHD][hapmap]
rs9465941	0.84[CEU][hapmap];1.00[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)