SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs169293	1.00[CHD][hapmap]
rs201291	1.00[CHD][hapmap]
rs201307	1.00[CHD][hapmap]
rs201315	1.00[CHD][hapmap]
rs201328	1.00[CHD][hapmap]
rs201330	1.00[CHD][hapmap]
rs201339	1.00[CHD][hapmap]
rs374654	1.00[CHD][hapmap]
rs3935207	1.00[CHD][hapmap]
rs4340995	1.00[CHD][hapmap]
rs4712569	1.00[CHD][hapmap]
rs56159522	0.86[EUR][1000 genomes]
rs62404502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62404503	0.96[EUR][1000 genomes]
rs62404504	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6909332	1.00[CHD][hapmap]
rs6915209	1.00[CHD][hapmap]
rs6915237	1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs6939622	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs7750839	1.00[CHD][hapmap]
rs7764365	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773973	1.00[CHD][hapmap]
rs9460594	0.80[EUR][1000 genomes]
rs9460597	0.84[CEU][hapmap];0.95[EUR][1000 genomes]
rs9465941	1.00[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)