SNP Report
Basic Infomation
| Name | rs374654 dbSNP |
|---|---|
| Location | chr:6,21009108 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11961135 | 1.00[CHB][hapmap] |
| rs11970030 | 1.00[CHB][hapmap] |
| rs16884302 | 1.00[CHB][hapmap] |
| rs16884376 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs169293 | 1.00[CHD][hapmap] |
| rs201291 | 1.00[CHD][hapmap] |
| rs201307 | 1.00[CHD][hapmap] |
| rs201315 | 1.00[CHD][hapmap] |
| rs201328 | 1.00[CHD][hapmap] |
| rs201330 | 1.00[CHD][hapmap] |
| rs201339 | 1.00[CHD][hapmap] |
| rs2876583 | 1.00[CHD][hapmap] |
| rs3935207 | 1.00[CHD][hapmap] |
| rs4340995 | 1.00[CHD][hapmap] |
| rs4389757 | 1.00[CHD][hapmap] |
| rs4413596 | 1.00[CHD][hapmap] |
| rs4710952 | 1.00[CHD][hapmap] |
| rs4710955 | 1.00[CHD][hapmap] |
| rs4712569 | 1.00[CHD][hapmap] |
| rs62403362 | 1.00[ASN][1000 genomes] |
| rs62403406 | 1.00[ASN][1000 genomes] |
| rs62403410 | 1.00[ASN][1000 genomes] |
| rs6909332 | 1.00[CHD][hapmap] |
| rs6910032 | 1.00[CHD][hapmap] |
| rs6915209 | 1.00[CHD][hapmap] |
| rs6915237 | 1.00[CHD][hapmap] |
| rs7749397 | 1.00[CHD][hapmap] |
| rs7750839 | 1.00[CHD][hapmap] |
| rs7758467 | 1.00[CHB][hapmap] |
| rs7766346 | 1.00[CHD][hapmap] |
| rs7773973 | 1.00[CHD][hapmap] |
| rs9465941 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014