SNP Report
Basic Infomation
| Name | rs6915237 dbSNP |
|---|---|
| Location | chr:6,21084822 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11967298 | 0.84[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs169293 | 1.00[CHD][hapmap] |
| rs201291 | 1.00[CHD][hapmap] |
| rs201307 | 1.00[CHD][hapmap] |
| rs201315 | 1.00[CHD][hapmap] |
| rs201328 | 1.00[CHD][hapmap] |
| rs201330 | 1.00[CHD][hapmap] |
| rs201339 | 1.00[CHD][hapmap] |
| rs2876583 | 1.00[CHD][hapmap] |
| rs374654 | 1.00[CHD][hapmap] |
| rs3935207 | 1.00[CHD][hapmap] |
| rs4340995 | 1.00[CHD][hapmap] |
| rs4389757 | 1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs4413596 | 1.00[CHD][hapmap] |
| rs4593348 | 0.83[ASW][hapmap] |
| rs4712569 | 1.00[CHD][hapmap] |
| rs56159522 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs57582226 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs62404502 | 0.87[EUR][1000 genomes] |
| rs62404503 | 0.85[EUR][1000 genomes] |
| rs62404504 | 0.87[EUR][1000 genomes] |
| rs6904348 | 0.92[ASW][hapmap] |
| rs6909332 | 1.00[CHD][hapmap] |
| rs6910032 | 1.00[CHD][hapmap] |
| rs6915209 | 1.00[CHD][hapmap] |
| rs6939622 | 0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7750839 | 1.00[CHD][hapmap] |
| rs7764365 | 0.89[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs7768536 | 0.88[EUR][1000 genomes] |
| rs7773973 | 1.00[CHD][hapmap] |
| rs9460594 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9460595 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9460597 | 0.93[EUR][1000 genomes] |
| rs9465941 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014