SNP Report

Basic Infomation

Name	rs4340995 dbSNP
Location	chr:6,21115300
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10456237	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10498701	1.00[CHD][hapmap]
rs169293	1.00[CHD][hapmap]
rs201291	1.00[CHD][hapmap];0.86[MKK][hapmap]
rs201307	1.00[CHD][hapmap]
rs201315	1.00[CHD][hapmap];0.81[MKK][hapmap]
rs201328	1.00[CHD][hapmap];0.93[MKK][hapmap]
rs201330	1.00[CHD][hapmap];0.93[MKK][hapmap]
rs201339	1.00[CHD][hapmap]
rs2328573	1.00[CHD][hapmap]
rs2446485	0.85[LWK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2446486	0.91[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2446488	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs374654	1.00[CHD][hapmap]
rs3935207	1.00[CHD][hapmap]
rs4389757	1.00[CHD][hapmap]
rs4712569	1.00[CHD][hapmap]
rs4712581	0.93[EUR][1000 genomes]
rs4712586	1.00[ASW][hapmap]
rs55857346	0.82[EUR][1000 genomes]
rs6904648	0.93[EUR][1000 genomes]
rs6909332	1.00[CHD][hapmap]
rs6915209	1.00[CHD][hapmap]
rs6915237	1.00[CHD][hapmap]
rs6941714	1.00[CHD][hapmap]
rs7750839	1.00[CHD][hapmap]
rs7773973	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9350320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9465941	1.00[CHD][hapmap]
rs9465963	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9986401	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)