SNP Report

Basic Infomation

Name	rs10498701 dbSNP
Location	chr:6,21144599
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10498699	1.00[JPT][hapmap]
rs11963150	1.00[JPT][hapmap]
rs11968036	1.00[JPT][hapmap]
rs16884319	1.00[JPT][hapmap]
rs16884325	1.00[JPT][hapmap]
rs16884514	1.00[JPT][hapmap]
rs17236645	1.00[JPT][hapmap]
rs17236694	1.00[JPT][hapmap]
rs17237178	1.00[JPT][hapmap]
rs2328573	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34957382	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935207	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4310041	1.00[JPT][hapmap]
rs4340995	1.00[CHD][hapmap]
rs4496780	1.00[JPT][hapmap]
rs4560627	1.00[JPT][hapmap]
rs59596472	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456399	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67645673	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909332	1.00[JPT][hapmap]
rs6913817	1.00[JPT][hapmap]
rs6915161	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918997	1.00[JPT][hapmap]
rs6921781	1.00[JPT][hapmap]
rs6922187	1.00[JPT][hapmap]
rs6929219	1.00[JPT][hapmap]
rs6929437	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941043	1.00[JPT][hapmap]
rs6941714	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738201	1.00[CHB][hapmap]
rs7750839	1.00[JPT][hapmap]
rs9460600	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460601	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460602	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460603	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465977	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465978	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465981	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)