SNP Report
Name | rs10498701   dbSNP |
---|---|
Location | chr:6,21144599 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10498699 | 1.00[JPT][hapmap] |
rs11963150 | 1.00[JPT][hapmap] |
rs11968036 | 1.00[JPT][hapmap] |
rs16884319 | 1.00[JPT][hapmap] |
rs16884325 | 1.00[JPT][hapmap] |
rs16884514 | 1.00[JPT][hapmap] |
rs17236645 | 1.00[JPT][hapmap] |
rs17236694 | 1.00[JPT][hapmap] |
rs17237178 | 1.00[JPT][hapmap] |
rs2328573 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34957382 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3935207 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs4310041 | 1.00[JPT][hapmap] |
rs4340995 | 1.00[CHD][hapmap] |
rs4496780 | 1.00[JPT][hapmap] |
rs4560627 | 1.00[JPT][hapmap] |
rs59596472 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6456399 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67645673 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6909332 | 1.00[JPT][hapmap] |
rs6913817 | 1.00[JPT][hapmap] |
rs6915161 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6918997 | 1.00[JPT][hapmap] |
rs6921781 | 1.00[JPT][hapmap] |
rs6922187 | 1.00[JPT][hapmap] |
rs6929219 | 1.00[JPT][hapmap] |
rs6929437 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6941043 | 1.00[JPT][hapmap] |
rs6941714 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7738201 | 1.00[CHB][hapmap] |
rs7750839 | 1.00[JPT][hapmap] |
rs9460600 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9460601 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9460602 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9460603 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9465977 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9465978 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9465981 | 1.00[JPT][hapmap] |
Symbol | Regulation type |
---|---|
CDKAL1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
TXN2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014