SNP Report
Basic Infomation
| Name | rs6921781 dbSNP |
|---|---|
| Location | chr:6,21028059 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10498699 | 1.00[JPT][hapmap] |
| rs10498701 | 1.00[JPT][hapmap] |
| rs11963150 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11968036 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11969472 | 1.00[ASN][1000 genomes] |
| rs16884319 | 1.00[JPT][hapmap] |
| rs16884325 | 1.00[JPT][hapmap] |
| rs16884514 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs17236645 | 1.00[JPT][hapmap] |
| rs17236694 | 1.00[JPT][hapmap] |
| rs17237178 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17834987 | 1.00[ASN][1000 genomes] |
| rs2328573 | 1.00[JPT][hapmap] |
| rs3935207 | 1.00[JPT][hapmap] |
| rs4310041 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4496780 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4560627 | 1.00[JPT][hapmap] |
| rs4712569 | 1.00[JPT][hapmap] |
| rs56317149 | 1.00[ASN][1000 genomes] |
| rs6909332 | 1.00[JPT][hapmap] |
| rs6913817 | 1.00[JPT][hapmap] |
| rs6917272 | 1.00[ASN][1000 genomes] |
| rs6918997 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6922187 | 1.00[JPT][hapmap] |
| rs6929219 | 1.00[JPT][hapmap] |
| rs6941043 | 1.00[JPT][hapmap] |
| rs6941714 | 1.00[JPT][hapmap] |
| rs73733187 | 1.00[ASN][1000 genomes] |
| rs73733199 | 1.00[ASN][1000 genomes] |
| rs73733200 | 1.00[ASN][1000 genomes] |
| rs7750839 | 1.00[JPT][hapmap] |
| rs8180606 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465981 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOX4 | Distal transcriptional regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FDX1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014