SNP Report
Basic Infomation
| Name | rs6917272 dbSNP |
|---|---|
| Location | chr:6,21079937 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11963150 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11968036 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11969472 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16884514 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17237178 | 1.00[ASN][1000 genomes] |
| rs17834987 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4310041 | 0.85[CEU][hapmap];0.83[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4496780 | 0.85[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56317149 | 1.00[ASN][1000 genomes] |
| rs6918997 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6921781 | 1.00[ASN][1000 genomes] |
| rs73733187 | 1.00[ASN][1000 genomes] |
| rs73733199 | 1.00[ASN][1000 genomes] |
| rs73733200 | 1.00[ASN][1000 genomes] |
| rs8180606 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014