SNP Report

Basic Infomation

Name	rs11968036 dbSNP
Location	chr:6,21103457
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10498699	1.00[JPT][hapmap]
rs10498701	1.00[JPT][hapmap]
rs11963150	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969472	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884319	1.00[JPT][hapmap]
rs16884325	1.00[JPT][hapmap]
rs16884514	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236645	1.00[JPT][hapmap]
rs17236694	1.00[JPT][hapmap]
rs17237178	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17834987	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328573	1.00[JPT][hapmap]
rs3935207	1.00[JPT][hapmap]
rs4310041	0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496780	0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560627	1.00[JPT][hapmap]
rs4712569	1.00[JPT][hapmap]
rs56317149	1.00[ASN][1000 genomes]
rs6909332	1.00[JPT][hapmap]
rs6913817	1.00[JPT][hapmap]
rs6917272	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918997	1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs6921781	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6922187	1.00[JPT][hapmap]
rs6929219	1.00[JPT][hapmap]
rs6941043	1.00[JPT][hapmap]
rs6941714	1.00[JPT][hapmap]
rs73733187	1.00[ASN][1000 genomes]
rs73733199	1.00[ASN][1000 genomes]
rs73733200	1.00[ASN][1000 genomes]
rs7750839	1.00[JPT][hapmap]
rs8180606	1.00[ASN][1000 genomes]
rs9465981	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)