SNP Report
Basic Infomation
| Name | rs2328573 dbSNP |
|---|---|
| Location | chr:6,21144010 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10498699 | 1.00[JPT][hapmap] |
| rs10498701 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11963150 | 1.00[JPT][hapmap] |
| rs11968036 | 1.00[JPT][hapmap] |
| rs16884319 | 1.00[JPT][hapmap] |
| rs16884325 | 1.00[JPT][hapmap] |
| rs16884514 | 1.00[JPT][hapmap] |
| rs17236645 | 1.00[JPT][hapmap] |
| rs17236694 | 1.00[JPT][hapmap] |
| rs17237178 | 1.00[JPT][hapmap] |
| rs28360550 | 0.83[AFR][1000 genomes] |
| rs34957382 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3935207 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs4310041 | 1.00[JPT][hapmap] |
| rs4340995 | 1.00[CHD][hapmap] |
| rs4496780 | 1.00[JPT][hapmap] |
| rs4560627 | 1.00[JPT][hapmap] |
| rs59596472 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6456399 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67645673 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6909332 | 1.00[JPT][hapmap] |
| rs6913817 | 1.00[JPT][hapmap] |
| rs6915161 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6918997 | 1.00[JPT][hapmap] |
| rs6921781 | 1.00[JPT][hapmap] |
| rs6922187 | 1.00[JPT][hapmap] |
| rs6929219 | 1.00[JPT][hapmap] |
| rs6929437 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6941043 | 1.00[JPT][hapmap] |
| rs6941714 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7738201 | 1.00[CHB][hapmap] |
| rs7746383 | 0.84[ASW][hapmap];0.85[LWK][hapmap];0.83[AFR][1000 genomes] |
| rs7750839 | 1.00[JPT][hapmap] |
| rs9460600 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460601 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460602 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460603 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465977 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465978 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465981 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014