SNP Report

Basic Infomation

Name	rs201339 dbSNP
Location	chr:6,20996312
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs169293	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs201287	0.84[CEU][hapmap]
rs201288	0.84[CEU][hapmap]
rs201291	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs201294	0.82[CEU][hapmap]
rs201305	0.81[CEU][hapmap]
rs201306	0.84[CEU][hapmap]
rs201307	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs201315	1.00[CHD][hapmap]
rs201328	1.00[CHD][hapmap]
rs201330	1.00[CHD][hapmap]
rs201341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201345	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201348	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201350	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201351	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201352	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201354	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201356	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201357	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201358	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201360	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2494729	0.84[CEU][hapmap]
rs2876583	1.00[CHD][hapmap]
rs365001	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs374654	1.00[CHD][hapmap]
rs383684	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935207	1.00[CHD][hapmap]
rs396308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340995	1.00[CHD][hapmap]
rs4389757	1.00[CHD][hapmap]
rs4413596	1.00[CHD][hapmap]
rs444005	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710952	1.00[CHD][hapmap]
rs4710955	1.00[CHD][hapmap]
rs4710960	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712569	1.00[CHD][hapmap]
rs4712571	0.89[EUR][1000 genomes]
rs6456388	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909332	1.00[CHD][hapmap]
rs6910032	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs6915209	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915237	1.00[CHD][hapmap]
rs6941808	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834326	1.00[ASN][1000 genomes]
rs7746754	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7747773	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749397	1.00[CHD][hapmap]
rs7749498	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750839	1.00[CHD][hapmap]
rs7766346	1.00[CHD][hapmap]
rs7768647	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773973	1.00[CHD][hapmap]
rs9350300	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350305	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465941	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000252046	Proximal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)