SNP Report
Basic Infomation
| Name | rs4712571 dbSNP |
|---|---|
| Location | chr:6,20942645 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs201339 | 0.89[EUR][1000 genomes] |
| rs201341 | 0.93[EUR][1000 genomes] |
| rs201345 | 0.90[EUR][1000 genomes] |
| rs201348 | 0.95[EUR][1000 genomes] |
| rs201350 | 0.95[EUR][1000 genomes] |
| rs201351 | 0.95[EUR][1000 genomes] |
| rs201352 | 0.95[EUR][1000 genomes] |
| rs201354 | 0.95[EUR][1000 genomes] |
| rs201356 | 0.93[EUR][1000 genomes] |
| rs201357 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs201358 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs201360 | 0.96[EUR][1000 genomes] |
| rs365001 | 0.92[EUR][1000 genomes] |
| rs383684 | 0.95[EUR][1000 genomes] |
| rs396308 | 0.89[EUR][1000 genomes] |
| rs444005 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4710960 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6456388 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6915209 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6941808 | 0.97[EUR][1000 genomes] |
| rs7746754 | 0.96[EUR][1000 genomes] |
| rs7747773 | 0.96[EUR][1000 genomes] |
| rs7749498 | 0.95[EUR][1000 genomes] |
| rs7768647 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9350300 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9350305 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9465941 | 0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014