SNP Report
Basic Infomation
| Name | rs201290 dbSNP |
|---|---|
| Location | chr:6,21020767 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11964983 | 1.00[ASN][1000 genomes] |
| rs16884681 | 1.00[ASN][1000 genomes] |
| rs16884685 | 1.00[ASN][1000 genomes] |
| rs16884693 | 1.00[ASN][1000 genomes] |
| rs16884699 | 1.00[ASN][1000 genomes] |
| rs16884705 | 1.00[ASN][1000 genomes] |
| rs16884709 | 1.00[ASN][1000 genomes] |
| rs16884713 | 1.00[ASN][1000 genomes] |
| rs169293 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201287 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201288 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201291 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201292 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201294 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201297 | 1.00[ASN][1000 genomes] |
| rs201303 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201304 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201305 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201306 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201307 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201308 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201309 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201310 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs201313 | 0.81[EUR][1000 genomes] |
| rs201315 | 1.00[ASN][1000 genomes] |
| rs201328 | 1.00[ASN][1000 genomes] |
| rs201330 | 1.00[ASN][1000 genomes] |
| rs2494729 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs364334 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55740001 | 1.00[ASN][1000 genomes] |
| rs55841329 | 1.00[ASN][1000 genomes] |
| rs58204955 | 1.00[ASN][1000 genomes] |
| rs59214549 | 1.00[ASN][1000 genomes] |
| rs60081217 | 1.00[ASN][1000 genomes] |
| rs62403408 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62404466 | 1.00[ASN][1000 genomes] |
| rs62404499 | 1.00[ASN][1000 genomes] |
| rs6922768 | 1.00[ASN][1000 genomes] |
| rs73387991 | 1.00[ASN][1000 genomes] |
| rs73387996 | 1.00[ASN][1000 genomes] |
| rs73387998 | 1.00[ASN][1000 genomes] |
| rs73387999 | 1.00[ASN][1000 genomes] |
| rs73388001 | 1.00[ASN][1000 genomes] |
| rs73388002 | 1.00[ASN][1000 genomes] |
| rs73389904 | 1.00[ASN][1000 genomes] |
| rs73389907 | 1.00[ASN][1000 genomes] |
| rs73389909 | 1.00[ASN][1000 genomes] |
| rs73389911 | 1.00[ASN][1000 genomes] |
| rs73735009 | 1.00[ASN][1000 genomes] |
| rs7454011 | 1.00[ASN][1000 genomes] |
| rs7761330 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOX4 | Distal transcriptional regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014