SNP Report
Basic Infomation
| Name | rs201292 dbSNP |
|---|---|
| Location | chr:6,21011257 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs169293 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201287 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201288 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201290 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201291 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201294 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs201303 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs201304 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs201305 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs201306 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs201307 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs201308 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs201309 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs201310 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2494729 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs364334 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014