SNP Report
Basic Infomation
| Name | rs58204955 dbSNP |
|---|---|
| Location | chr:6,20867622 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs169293 | 1.00[ASN][1000 genomes] |
| rs201287 | 1.00[ASN][1000 genomes] |
| rs201288 | 1.00[ASN][1000 genomes] |
| rs201290 | 1.00[ASN][1000 genomes] |
| rs201291 | 1.00[ASN][1000 genomes] |
| rs201294 | 1.00[ASN][1000 genomes] |
| rs201297 | 1.00[ASN][1000 genomes] |
| rs201303 | 1.00[ASN][1000 genomes] |
| rs201304 | 1.00[ASN][1000 genomes] |
| rs201305 | 1.00[ASN][1000 genomes] |
| rs201306 | 1.00[ASN][1000 genomes] |
| rs201307 | 1.00[ASN][1000 genomes] |
| rs201308 | 1.00[ASN][1000 genomes] |
| rs201309 | 1.00[ASN][1000 genomes] |
| rs201310 | 1.00[ASN][1000 genomes] |
| rs201315 | 1.00[ASN][1000 genomes] |
| rs201328 | 1.00[ASN][1000 genomes] |
| rs201330 | 1.00[ASN][1000 genomes] |
| rs2494729 | 1.00[ASN][1000 genomes] |
| rs364334 | 1.00[ASN][1000 genomes] |
| rs55740001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55841329 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59214549 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60081217 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62403408 | 1.00[ASN][1000 genomes] |
| rs62404466 | 1.00[ASN][1000 genomes] |
| rs6908429 | 1.00[EUR][1000 genomes] |
| rs6916036 | 1.00[EUR][1000 genomes] |
| rs6922768 | 1.00[ASN][1000 genomes] |
| rs73735009 | 0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73735014 | 1.00[EUR][1000 genomes] |
| rs7454011 | 1.00[ASN][1000 genomes] |
| rs7761330 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014