SNP Report

Basic Infomation

Name	rs4401656 dbSNP
Location	chr:6,21095142
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11757677	0.81[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11963640	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12529531	0.85[ASN][1000 genomes]
rs16884524	0.80[ASN][1000 genomes]
rs2013346	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068071	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2068072	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2446484	0.92[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs2446487	0.88[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs2446489	0.88[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2493869	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs4074910	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs4076112	0.83[CHB][hapmap];0.94[CHD][hapmap];0.82[ASN][1000 genomes]
rs4283868	0.80[CHD][hapmap]
rs4454125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574622	0.89[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6456397	0.84[CHB][hapmap];0.91[CHD][hapmap];0.80[ASN][1000 genomes]
rs6927498	0.81[ASN][1000 genomes]
rs72838005	0.85[ASN][1000 genomes]
rs7762612	0.82[CEU][hapmap]
rs9295492	0.81[CEU][hapmap];0.80[CHD][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9295493	0.91[CHD][hapmap];0.84[JPT][hapmap]
rs9295495	0.89[CHD][hapmap]
rs9366374	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368271	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368276	0.87[ASW][hapmap]
rs9460598	0.91[CHD][hapmap]
rs9465965	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9465966	0.85[ASN][1000 genomes]
rs9465970	0.91[CHD][hapmap]
rs959711	0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)