SNP Report
Basic Infomation
| Name | rs7762612 dbSNP |
|---|---|
| Location | chr:6,21069522 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946427 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11757677 | 0.91[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs11963640 | 0.92[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12199982 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2013346 | 0.87[EUR][1000 genomes] |
| rs2068071 | 0.92[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs2068072 | 0.91[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs4401656 | 0.82[CEU][hapmap] |
| rs4454125 | 0.82[CEU][hapmap] |
| rs61183631 | 0.88[ASN][1000 genomes] |
| rs6932873 | 0.89[ASN][1000 genomes] |
| rs9295492 | 0.91[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs9356760 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9356761 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9366374 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9368271 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014