SNP Report
Basic Infomation
| Name | rs12199982 dbSNP |
|---|---|
| Location | chr:6,21070349 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946427 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11757677 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11963640 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2013346 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2068071 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2068072 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61183631 | 0.88[ASN][1000 genomes] |
| rs6932873 | 0.89[ASN][1000 genomes] |
| rs7762612 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9295492 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9356760 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9356761 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9366374 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9368271 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014