SNP Report

Basic Infomation

Name	rs11757677 dbSNP
Location	chr:6,21073029
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946427	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11963640	0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12199982	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13203959	0.84[YRI][hapmap]
rs2013346	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2068071	0.92[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2068072	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2446484	0.81[EUR][1000 genomes]
rs2446487	0.84[EUR][1000 genomes]
rs2446489	0.85[EUR][1000 genomes]
rs2493869	0.82[EUR][1000 genomes]
rs4280955	0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4283868	0.83[CHB][hapmap];0.91[CHD][hapmap];0.85[TSI][hapmap]
rs4401656	0.81[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4454125	0.81[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7762612	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs9295492	0.82[ASW][hapmap];0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9356760	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9356761	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9366374	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368271	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465965	0.89[CHB][hapmap]
rs959711	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)