SNP Report
Basic Infomation
| Name | rs2068072 dbSNP |
|---|---|
| Location | chr:6,21076770 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946427 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11757677 | 0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11963640 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11963654 | 0.81[YRI][hapmap] |
| rs12199982 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2013346 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2068071 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2446484 | 0.82[CEU][hapmap] |
| rs2446489 | 0.80[EUR][1000 genomes] |
| rs2493869 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4280955 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4283868 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes] |
| rs4401656 | 0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4454125 | 0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7762612 | 0.91[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs9295492 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9356760 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9356761 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9366374 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9368271 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014