SNP Report
Basic Infomation
| Name | rs11963654 dbSNP |
|---|---|
| Location | chr:6,21077632 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10498700 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10806931 | 0.84[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs11963640 | 0.82[YRI][hapmap] |
| rs13203959 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13214341 | 0.93[EUR][1000 genomes] |
| rs2068072 | 0.81[YRI][hapmap] |
| rs34865903 | 0.91[EUR][1000 genomes] |
| rs4382241 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs4569951 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs60248721 | 0.91[EUR][1000 genomes] |
| rs6936205 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs9295491 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9350318 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs9358388 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9366375 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9366377 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9366378 | 0.92[EUR][1000 genomes] |
| rs9368276 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014