SNP Report
Basic Infomation
| Name | rs10498700 dbSNP |
|---|---|
| Location | chr:6,21071853 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806931 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11963654 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13203959 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13214341 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34865903 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4382241 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs4569951 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs60248721 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6936205 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9295491 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9350318 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9358388 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9366375 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9366376 | 0.82[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs9366377 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs9366378 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9368276 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014